Until we are all vaccinated, masks still work (a comprehensive simulation of mask usage)

Aug 9, 2021 9:13 PM

quartershadow

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Published my first first-author paper of graduate school, showing that masks work only when everyone uses them (correctly). You can read the paper here: https://www.nature.com/articles/s41598-021-94960-5 , free to the public!

For those more technical, or don't believe in peer-reviewed science, all my source code is here, run your own simulation: https://github.com/adamcatching/SARS_SEIR_Simulation

masks

simulation

facemask

covid19

science_and_tech

Congratulations on being published in Nature!

4 years ago | Likes 3 Dislikes 0

This is very cool!

4 years ago | Likes 3 Dislikes 0

(correctly) well shit, we're doomed

4 years ago | Likes 2 Dislikes 0

Makes me think of those Zombie flash games (where you had to blast the zombies before too many people got infected)

4 years ago | Likes 1 Dislikes 0

4 years ago | Likes 3 Dislikes 0

Congrats on your first first-author paper! Make sure you celebrate this awesome milestone :)

4 years ago | Likes 4 Dislikes 0

"You don't have to wear a mask any more" I don't have to wear a condom, but I'm still gonna

4 years ago | Likes 11 Dislikes 0

As long as you don't shame people who choose NOT to wear a condom at the grocery store then you do you.

4 years ago | Likes 5 Dislikes 1

What's the blue vs black line on your graphs?

4 years ago | Likes 13 Dislikes 0

Really, even after we are all vaccinated, masks will help. They will depress all kinds of bacterial and viral maladies. Look at Japan- they

4 years ago | Likes 1 Dislikes 0

were common wear before COVID, they will be used after, too.

4 years ago | Likes 1 Dislikes 0

Congrats on the nature paper!@op

4 years ago | Likes 1 Dislikes 0

Top stuff.

4 years ago | Likes 3 Dislikes 0

Children under 12 cant be vaccinated. 99.9% of all children under 12 are unvaccinated.

4 years ago | Likes 1 Dislikes 0

Remember "flatten the curve?" Pepperidge Farm remembers.

4 years ago | Likes 1 Dislikes 0

Well done and congratulations!

4 years ago | Likes 1 Dislikes 0

Sad thing is no stat, proof, fact will change these antivaxers and antimaskers. Honestly…it’s fucking sad…and worse, they choose to be cunts

4 years ago | Likes 2 Dislikes 0

Interesting to use ABM vs ODE. Can you compare to an ODE-based approach to test yours? Also, how'd your model handle vaccination?

4 years ago | Likes 4 Dislikes 0

You should have the deaths fall out of the graph into a hopper

4 years ago | Likes 7 Dislikes 0

Seems like a different field than your usual field of Enterovirus, but congrats!

4 years ago | Likes 2 Dislikes 0

Someone did their research, that's what we do when the lab wasn't shut down during the pandemic, we are back to Enteroviruses again

4 years ago | Likes 2 Dislikes 0

Hooray for data, hooray for source code, hooray for science!

4 years ago | Likes 1 Dislikes 0

Brilliant OP Post this throughout social media please

4 years ago | Likes 1 Dislikes 0

My issue with wearing masks is there are few people educating on the correct masks and procedures to use. Informed/correct usage=better too

4 years ago | Likes 1 Dislikes 0

Great work, keep it up!

4 years ago | Likes 24 Dislikes 0

This Pong game is really hard....

4 years ago | Likes 2 Dislikes 0

and real masks, not that shite with "improved airflow" by not filtering jack shit

4 years ago | Likes 2 Dislikes 0

Thanks for sharing! What does the bottom line represent in the graph?

4 years ago | Likes 36 Dislikes 0

The bottom edge of the image.

4 years ago | Likes 4 Dislikes 2

Number of infected at that day in black, total infected in blue

4 years ago | Likes 29 Dislikes 0

Said it backwards bud, black is total, blue is that day.

4 years ago | Likes 3 Dislikes 0

Backwards?

4 years ago | Likes 7 Dislikes 0

Im confused… sorry. So black is total number of infections? Blue is current infections?

4 years ago | Likes 4 Dislikes 0

Yeah, unless I'm missing something, how could blue be total infections, yet falls to 0, while black climbs and "plateaus"?

4 years ago | Likes 3 Dislikes 0

Yea he just said it backwards. Black is total line, it checks out.

4 years ago | Likes 2 Dislikes 0

Maybe if 100% are infected there's no new infections each day?

4 years ago | Likes 1 Dislikes 1

Wait no that would be the opposite colours to what OP said above. Sorry, no idea..

4 years ago | Likes 2 Dislikes 0

Well I just Googled, “why masks won’t stop the spread of COVID” and have over 100 hits so check…mate /s

4 years ago | Likes 5 Dislikes 0

Can you do one that simulates the effectiveness of quarantining? (1/3)

4 years ago | Likes 76 Dislikes 0

3Blue1Brown does some good simulations, though not peer reviewed... https://www.youtube.com/watch?v=gxAaO2rsdIs

4 years ago | Likes 8 Dislikes 0

One where a dot, once infected, either completes its current traversal or maybe makes one more, but then sits immobile on the edge of (2/3)

4 years ago | Likes 33 Dislikes 0

the field, only contacting whatever dots run into it, until its infection clears? (3/3)

4 years ago | Likes 25 Dislikes 0

You could look at real numbers, new zealand april last year. I know it is real because I live here, but i guess i could be fake too

4 years ago | Likes 2 Dislikes 0

Yup! In the paper we compared mask usage vs social distancing, with different levels of participation, social distancing is not as effective

4 years ago | Likes 38 Dislikes 0

Social distancing might be the equivalent of the withdrawal method of birth control?

4 years ago | Likes 12 Dislikes 0

Good old pull and pray

4 years ago | Likes 2 Dislikes 0

That's like saying social distancing doesn't work if you often go near people. Pull out works if done right.

4 years ago | Likes 3 Dislikes 5

Let me preface this by saying I believe that vaccinations and mask wearing is an effective and necessary means for ending the pandemic (1/?)

4 years ago | Likes 2 Dislikes 0

but i'm curious as to how you would accurately calculate the efficacy of mask wearing in such a programming model? We know that wearing(2/?)

4 years ago | Likes 1 Dislikes 0

masks helps reduce spread by limiting the travel (& also capturing a small percentage)of droplets, but I couldn't imagine how we would (3/?)

4 years ago | Likes 1 Dislikes 0

get real world statistics. Unless the efficacy of masks in the equation is based off of a laboratory model or population statistics? (4/4)

4 years ago | Likes 2 Dislikes 0

Lol at thinking people who don’t believe in peer review could run your code. XD

4 years ago | Likes 601 Dislikes 3

idk man, i know a few coders who dont believe in peer reviews or pull results

4 years ago | Likes 1 Dislikes 0

Peer review can and does let shit thru. The "vaccine -> autism" article was published in the Lancet, that's a reputed peer reviewed journal.

4 years ago | Likes 7 Dislikes 0

We were in peer review for 8 months, 3 revisions, most of that time updating code, rerunning math, better matching data to real world stats

4 years ago | Likes 4 Dislikes 0

Oh, by no means is it perfect. There’s issues, but the system generally works.

4 years ago | Likes 2 Dislikes 0

My point is that just bc someone will double check a peer reviewed article's conclusions doesn't mean they don't "believe in peer review".

4 years ago | Likes 1 Dislikes 0

Oh no. Definitely. I don’t mean that someone who questions wouldn’t believe.

4 years ago | Likes 1 Dislikes 0

"I put your code in the youtube search bar and got a music video. Fuck you for the rickroll!"

4 years ago | Likes 2 Dislikes 0

There's a joke here about code reviews and how no one does them, I just know it.

4 years ago | Likes 36 Dislikes 0

i added "idk man, i know a few coders who dont believe in peer reviews or pull results"

4 years ago | Likes 1 Dislikes 0

There are as many as there are completed code reviews. Almost 0

4 years ago | Likes 8 Dislikes 1

4 years ago | Likes 49 Dislikes 0

I want to run his code…. It looks interesting. That said I do believe in peer review, so I guess I’m a bad one to judge

4 years ago | Likes 11 Dislikes 0

It's just python, only takes a minute to get an environment going. That said, NEVER run code you can't review yourself.

4 years ago | Likes 8 Dislikes 0

Thanks, I am kicking myself for not setting up a miniconda env to run, but any decent laptop can run it! Making the animations takes awhile

4 years ago | Likes 2 Dislikes 0

The evidence is stark. No masks, sharp peak, hospitals overwhelmed, lots of suffering. With 80%, still 75% get the disease but ,..

4 years ago | Likes 2 Dislikes 0

The current infected curve is flattened significantly. Would be interested to know the underlying assumptions like chance of infection when

4 years ago | Likes 2 Dislikes 0

Uninfected runs into infected for both masked and unmasked.

4 years ago | Likes 2 Dislikes 0

I read the paper. Really well done study. Thanks. This information is important for policy makers.

4 years ago | Likes 2 Dislikes 0